The GATK is a structured software library that makes writing efficient analysis tools using next-generation sequencing data very easy, and second it’s a suite of tools for working with the human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and local realigner.

Versions:4.0.0; 3.4.0; 3.2-2; 3.5; 3.6; 3.7
License:Broad Institute Software License Agreement

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