Twinscan gene-structure prediction
This software is Open Source. almaBTE is a pipeline for detecting mis-assemblies in metagenomic assemblies.
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.
Scythe is a Bayesian adapter trimmer .
SGA – String Graph Assembler
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
package for management of RNS-Seq datasets
PLATform for Assembling NUcleotide Sequences
An automated data conversion tool for connecting population genetics and genomics programs
The OMA (“Orthologous MAtrix””) project is a method and database for the inference of orthologs among complete genomes.”
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